Package: gsalib 2.2.1
Louis Bergelson
gsalib: Utility Functions for 'GATK'
Provides utility functions used by the Genome Analysis Toolkit ('GATK') to load tables and plot data. The 'GATK' is a toolkit for variant discovery in high-throughput sequencing data.
Authors:
gsalib_2.2.1.tar.gz
gsalib_2.2.1.zip(r-4.5)gsalib_2.2.1.zip(r-4.4)gsalib_2.2.1.zip(r-4.3)
gsalib_2.2.1.tgz(r-4.4-any)gsalib_2.2.1.tgz(r-4.3-any)
gsalib_2.2.1.tar.gz(r-4.5-noble)gsalib_2.2.1.tar.gz(r-4.4-noble)
gsalib_2.2.1.tgz(r-4.4-emscripten)gsalib_2.2.1.tgz(r-4.3-emscripten)
gsalib.pdf |gsalib.html✨
gsalib/json (API)
NEWS
| # Install 'gsalib' in R: |
| install.packages('gsalib', repos = c('https://broadinstitute.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/broadinstitute/gsalib/issues
Last updated 1 years agofrom:f1822a3f2a. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 10 2024 |
| R-4.5-win | OK | Oct 10 2024 |
| R-4.5-linux | OK | Oct 10 2024 |
| R-4.4-win | OK | Oct 10 2024 |
| R-4.4-mac | OK | Oct 10 2024 |
| R-4.3-win | OK | Oct 10 2024 |
| R-4.3-mac | OK | Oct 10 2024 |
Exports:gsa.read.gatkreportgsa.reshape.concordance.table
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Utility functions for GATK | gsalib-package gsalib |
| Function to read in a GATKReport | gsa.read.gatkreport |
| Function to read in an old-style GATKReport | gsa.read.gatkreportv0 |
| Function to read in a new-style GATKReport | gsa.read.gatkreportv1 |
| Reshape a Concordance Table | gsa.reshape.concordance.table |
