Package: gsalib 2.2.1
Louis Bergelson
gsalib: Utility Functions for 'GATK'
Provides utility functions used by the Genome Analysis Toolkit ('GATK') to load tables and plot data. The 'GATK' is a toolkit for variant discovery in high-throughput sequencing data.
Authors:
gsalib_2.2.1.tar.gz
gsalib_2.2.1.zip(r-4.7-any)gsalib_2.2.1.zip(r-4.6-any)gsalib_2.2.1.zip(r-4.5-any)
gsalib_2.2.1.tgz(r-4.6-any)gsalib_2.2.1.tgz(r-4.5-any)
gsalib_2.2.1.tar.gz(r-4.7-any)gsalib_2.2.1.tar.gz(r-4.6-any)
gsalib_2.2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
gsalib/json (API)
| # Install 'gsalib' in R: |
| install.packages('gsalib', repos = c('https://broadinstitute.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/broadinstitute/gsalib/issues
Last updated from:f1822a3f2a. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 80 | ||
| source / vignettes | OK | 106 | ||
| linux-release | OK | 80 | ||
| macos-release | OK | 144 | ||
| macos-oldrel | OK | 196 | ||
| windows-devel | OK | 41 | ||
| windows-release | OK | 55 | ||
| windows-oldrel | OK | 56 | ||
| wasm-release | OK | 64 |
Exports:gsa.read.gatkreportgsa.reshape.concordance.table
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Utility functions for GATK | gsalib-package gsalib |
| Function to read in a GATKReport | gsa.read.gatkreport |
| Function to read in an old-style GATKReport | gsa.read.gatkreportv0 |
| Function to read in a new-style GATKReport | gsa.read.gatkreportv1 |
| Reshape a Concordance Table | gsa.reshape.concordance.table |