Package: gsalib 2.2.1

Louis Bergelson

gsalib: Utility Functions for 'GATK'

Provides utility functions used by the Genome Analysis Toolkit ('GATK') to load tables and plot data. The 'GATK' is a toolkit for variant discovery in high-throughput sequencing data.

Authors:Kiran Garimella

gsalib_2.2.1.tar.gz
gsalib_2.2.1.zip(r-4.7)gsalib_2.2.1.zip(r-4.6)gsalib_2.2.1.zip(r-4.5)
gsalib_2.2.1.tgz(r-4.6-any)gsalib_2.2.1.tgz(r-4.5-any)
gsalib_2.2.1.tar.gz(r-4.7-any)gsalib_2.2.1.tar.gz(r-4.6-any)
gsalib_2.2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
gsalib/json (API)
NEWS

# Install 'gsalib' in R:

install.packages('gsalib', repos = c('https://broadinstitute.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/broadinstitute/gsalib/issues

On CRAN:

3.94 score 6 stars 29 scripts 375 downloads 1 mentions 2 exports 0 dependencies

Last updated from:f1822a3f2a. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	95
source / vignettes	OK	132
linux-release-x86_64	OK	136
macos-release-arm64	OK	187
macos-oldrel-arm64	OK	160
windows-devel	OK	59
windows-release	OK	86
windows-oldrel	OK	55
wasm-release	OK	78

Exports:gsa.read.gatkreport gsa.reshape.concordance.table

Dependencies:

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Utility functions for GATK	gsalib-package gsalib
Function to read in a GATKReport	gsa.read.gatkreport
Function to read in an old-style GATKReport	gsa.read.gatkreportv0
Function to read in a new-style GATKReport	gsa.read.gatkreportv1
Reshape a Concordance Table	gsa.reshape.concordance.table