{ "_id": "6a1038f7acfb0bcc41c9ac43", "Package": "gsalib", "Type": "Package", "Title": "Utility Functions for 'GATK'", "Version": "2.2.1", "Date": "2022-10-07", "Author": "Kiran Garimella", "Maintainer": "Louis Bergelson ", "Description": "Provides utility functions used by the Genome Analysis\nToolkit ('GATK') to load tables and plot data. The 'GATK' is a\ntoolkit for variant discovery in high-throughput sequencing\ndata.", "URL": "https://gatk.broadinstitute.org/hc/en-us,\nhttps://github.com/broadinstitute/gatk,\nhttps://github.com/broadinstitute/gsalib/", "BugReports": "https://github.com/broadinstitute/gsalib/issues", "License": "MIT + file LICENSE", "LazyLoad": "yes", "NeedsCompilation": "no", "Repository": "https://broadinstitute.r-universe.dev", "Date/Publication": "2023-11-01 20:39:57 UTC", "RemoteUrl": "https://github.com/broadinstitute/gsalib", "RemoteRef": "HEAD", "RemoteSha": "f1822a3f2a3b4afed31edffff35dd5dac2136731", "Packaged": { "Date": "2026-05-12 05:43:13 UTC", "User": "root" }, "MD5sum": "84711f5dd422cf3dab7374ebc40b7d39", "_user": "broadinstitute", "_type": "src", "_file": "gsalib_2.2.1.tar.gz", "_fileid": "594e700f398faaf926291ac4e2fbf1bfb2d7967596b4038aa0c6da5b74b3e89d", "_filesize": 102832, "_sha256": "594e700f398faaf926291ac4e2fbf1bfb2d7967596b4038aa0c6da5b74b3e89d", "_created": "2026-05-12T05:43:13.000Z", "_published": "2026-05-22T11:07:35.204Z", "_distro": "noble", "_jobs": [ { "job": 77367517588, "time": 95, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "6936583277" }, { "job": 77367518051, "time": 136, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6936591061" }, { "job": 77367517915, "time": 160, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "6936590510" }, { "job": 77367517973, "time": 187, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "6936589935" }, { "job": 77367517305, "time": 132, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6936558819" }, { "job": 77367517107, "time": 78, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7159023749" }, { "job": 77367517911, "time": 59, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "6936573282" }, { "job": 77367518481, "time": 55, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "6936572391" }, { "job": 77367518101, "time": 86, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "6936582066" } ], "_buildurl": "https://github.com/r-universe/broadinstitute/actions/runs/25715784772", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/broadinstitute/gsalib", "_commit": { "id": "f1822a3f2a3b4afed31edffff35dd5dac2136731", "author": "Louis Bergelson ", "committer": "GitHub ", "message": "Update gsalib-package.Rd\n\nRemove redundant and out of date table", "time": 1698871197 }, "_maintainer": { "name": "Louis Bergelson", "email": "louisb@broadinstitute.org", "login": "lbergelson", "uuid": 4700332 }, "_registered": true, "_dependencies": [], "_owner": "broadinstitute", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 6, "_contributors": [ { "user": "lbergelson", "count": 5, "uuid": 4700332 } ], "_userbio": { "uuid": 393552, "type": "organization", "name": "Broad Institute", "description": "Broad Institute of MIT and Harvard" }, "_downloads": { "count": 375, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/gsalib" }, "_mentions": 1, "_devurl": "https://github.com/broadinstitute/gsalib", "_searchresults": 29, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/gsalib.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/broadinstitute/gsalib", "_realowner": "broadinstitute", "_cranurl": true, "_releases": [ { "version": "2.0", "date": "2013-07-03" }, { "version": "2.1", "date": "2014-12-10" }, { "version": "2.2.1", "date": "2022-10-08" } ], "_exports": [ "gsa.read.gatkreport", "gsa.reshape.concordance.table" ], "_help": [ { "page": "gsalib-package", "title": "Utility functions for GATK", "topics": [ "gsalib-package", "gsalib" ] }, { "page": "gsa.read.gatkreport", "title": "Function to read in a GATKReport", "topics": [ "gsa.read.gatkreport" ] }, { "page": "gsa.read.gatkreportv0", "title": "Function to read in an old-style GATKReport", "topics": [ "gsa.read.gatkreportv0" ] }, { "page": "gsa.read.gatkreportv1", "title": "Function to read in a new-style GATKReport", "topics": [ "gsa.read.gatkreportv1" ] }, { "page": "gsa.reshape.concordance.table", "title": "Reshape a Concordance Table", "topics": [ "gsa.reshape.concordance.table" ] } ], "_readme": "https://github.com/broadinstitute/gsalib/raw/HEAD/README.md", "_rundeps": [], "_score": 3.9395192526186182, "_indexed": true, "_nocasepkg": "gsalib", "_universes": [ "broadinstitute", "lbergelson" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.2.1", "date": "2026-05-12T05:45:01.000Z", "distro": "noble", "commit": "f1822a3f2a3b4afed31edffff35dd5dac2136731", "fileid": "21a63dae5ca10e8c21554bfe882024abe62f0eb9189578aae1e3a821ee2d024d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/broadinstitute/actions/runs/25715784772" }, { "r": "4.6.0", "os": "linux", "version": "2.2.1", "date": "2026-05-12T05:45:33.000Z", "distro": "noble", "commit": "f1822a3f2a3b4afed31edffff35dd5dac2136731", "fileid": "d07ebf5249224c2295ad47a94f145edcf0a1a2c25bd5f04f114fc7c3f9ca3692", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/broadinstitute/actions/runs/25715784772" }, { "r": "4.5.3", "os": "mac", "version": "2.2.1", "date": "2026-05-12T05:45:33.000Z", "commit": "f1822a3f2a3b4afed31edffff35dd5dac2136731", "fileid": "45b5d6f2688a6cb93fab4b462b00d3ce1a9fef975485ee956ead1d3748c30068", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/broadinstitute/actions/runs/25715784772" }, { "r": "4.6.0", "os": "mac", "version": "2.2.1", "date": "2026-05-12T05:45:27.000Z", "commit": "f1822a3f2a3b4afed31edffff35dd5dac2136731", "fileid": "cc6a4a2899f9dec513760757ed161a7fc7e91e22af9d105d9bb8698061148375", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/broadinstitute/actions/runs/25715784772" }, { "r": "4.7.0", "os": "win", "version": "2.2.1", "date": "2026-05-12T05:44:12.000Z", "commit": "f1822a3f2a3b4afed31edffff35dd5dac2136731", "fileid": "521295f9fe0d3da93129605e6984cb225d97c341cc55b81b6f09010939cd18e2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/broadinstitute/actions/runs/25715784772" }, { "r": "4.5.3", "os": "win", "version": "2.2.1", "date": "2026-05-12T05:44:11.000Z", "commit": "f1822a3f2a3b4afed31edffff35dd5dac2136731", "fileid": "f9e7dda5d2d88285403fb87eb785088b8a8df1cd5eb54b167e41a0062c7859ef", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/broadinstitute/actions/runs/25715784772" }, { "r": "4.6.0", "os": "win", "version": "2.2.1", "date": "2026-05-12T05:44:54.000Z", "commit": "f1822a3f2a3b4afed31edffff35dd5dac2136731", "fileid": "c0dd4ffe37cbb8f65afbc4d8b093009610c885ec277d80664084763c4a3d1d36", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/broadinstitute/actions/runs/25715784772" }, { "r": "4.6.0", "os": "wasm", "version": "2.2.1", "date": "2026-05-22T11:07:18.000Z", "commit": "f1822a3f2a3b4afed31edffff35dd5dac2136731", "fileid": "3f98fe57b5aa739411e84c0e44bcbbc42a72e018a45113ce37807a5cd7402d19", "status": "success", "buildurl": "https://github.com/r-universe/broadinstitute/actions/runs/25715784772" } ] }